PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_14336.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 267aa    MW: 30214.9 Da    PI: 6.7814
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_14336.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141966148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g W++eEd +l ++    G g+W+ +a+  g+ R++k+c++rw +yl
  Rsa1.0_14336.1_g00001.1 19 KGLWSPEEDSKLMQYMINNGQGCWSDVAKNAGLQRCGKSCRLRWINYL 66
                             678*******************************************97 PP

2Myb_DNA-binding52.88.8e-1772115146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+++++E+el+++ +  lG++ W+ Ia++m+ gRt++++k++w++
  Rsa1.0_14336.1_g00001.1  72 RGAFSPQEEELIIRFHSILGNR-WSQIAARMP-GRTDNEIKNFWNS 115
                              89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9221466IPR017930Myb domain
SuperFamilySSF466896.97E-2817113IPR009057Homeodomain-like
SMARTSM007171.2E-101868IPR001005SANT/Myb domain
PfamPF002491.0E-131966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-232073IPR009057Homeodomain-like
CDDcd001671.36E-82266No hitNo description
PROSITE profilePS5129425.00667121IPR017930Myb domain
SMARTSM007175.4E-1671119IPR001005SANT/Myb domain
PfamPF002493.0E-1572115IPR001005SANT/Myb domain
CDDcd001673.06E-1174114No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2574122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRKPEVASAA THQVKKMKKG LWSPEEDSKL MQYMINNGQG CWSDVAKNAG LQRCGKSCRL  60
RWINYLRPDL KRGAFSPQEE ELIIRFHSIL GNRWSQIAAR MPGRTDNEIK NFWNSTIKKR  120
LKKMSDASSL VNNSSSSPNA SDSSSNNTSS SLDLKDIIGS FMSFQEQGFV NPSLTNIPTS  180
NNPFQAPHMI SHPCHDDYTP YVDGFYGVNT RLQGGIYFPP LECEEGDWYK ADINNHVVEM  240
NTNGAGNVPE GMRMEEYWDL DQLMSTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28171215108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382830.0KF738283.1 Brassica napus MYB transcription factor 46 (MYB46.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626410.11e-170PREDICTED: transcription factor MYB46-like
RefseqXP_013674543.11e-170PREDICTED: transcription factor MYB46-like
SwissprotQ9LXV21e-156MYB46_ARATH; Transcription factor MYB46
TrEMBLA0A078CTL31e-170A0A078CTL3_BRANA; BnaA03g04050D protein
STRINGBra006166.1-P1e-169(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-150myb domain protein 46